Questions
- ?
IMPORTANTE
IMPORTANTE BLAST and its Variants: BLAST: search for long local alignments without gaps BLASTN: Uses the following matrix to search for good scores between two sequences, still without gaps
BLASTX: Like BLASTN but also translates the nucleoutide sequence into the protein sequence. BLASTP: Searches for the exact match of a sequence of usually 4 amino acids in the database, than creates a query adding other matching amino acids. ~Ex.:
BLAST 2.0: insert gaps BLAST+: command line tools, for using your own BLAST algorithm in local. Magic-BLAST: tool for mapping large next-generation RNA or DNA sequencing, it runs against a whole genome or transcriptome.
Slides with Notes
IMPORTANTE BLAST and its Variants: BLAST: search for long local alignments without gaps BLASTN: Uses the following matrix to search for good scores between two sequences, still without gaps